According to the national policy and current situation of the development of health qigong, the purpose of the thesis is to further find health qigong is different for men and women’s body quality, health qigong exercises the benefits if there is a difference,through the difference to under the quality education to carry out the health qigong organization provides the teaching object and understanding of the scope of health qigong for small muscle group and the influence of core muscles. In this paper, the sophomore students of hu bei three gorges university were selected as the experimental group. There were 200 people. After 16 weeks of health qigong teaching, data were extracted for comparative analysis. The results showed that the Health qigong increased the physical quality of male and female students to different degrees. However, compared with boys, girls’ quality growth effect is more obvious. The conclusion is that the Health qigong is more suitable for people with low quality foundation. At the same time, Health qigong has a good effect on the growth of handgrip strength and standing with eyes closed on one leg, indicating that it has a good effect on the exercise of similar knuckle muscle groups and core strength. Therefore, it is feasible to add Health qigong to physical training institutions for primary and middle school students as a quality education project.